PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1063G00001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 263aa    MW: 30193.8 Da    PI: 6.9533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1063G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q+G+g+W++++   g+ R+ k+c++rw +yl
     AA1063G00001 14 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding44.14.7e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+  ++++  +lG++ W++Ia++++  Rt++++k++w+++l
     AA1063G00001  67 RGNFTSHEEGMIIHLQSLLGNK-WASIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.003965IPR017930Myb domain
SuperFamilySSF466891.83E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001671.55E-101661No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2465117IPR009057Homeodomain-like
SMARTSM007174.3E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129418.21266116IPR017930Myb domain
PfamPF002494.5E-1267112IPR001005SANT/Myb domain
CDDcd001671.45E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ QHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGMIIH LQSLLGNKWA SIASYLPQRT DNDIKNYWNT HLKKKLNKSH  120
LTSECDEKNT ADNISVQNST ARNIIMNHRS TYASSTENIS RLLEGWMRAS PKNSSDFEKN  180
NRIDHNQLKG SWEEDHSKRI KDFDVSKKLL NDHHDDSDDV DVDDDQNVPP PLTFIEKWLL  240
EETTSGGGHI EEMSHLMELS NML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172358.11e-136putative transcription factor MYB60
SwissprotP813926e-83MYB06_ANTMA; Myb-related protein 306
TrEMBLQ8GYP51e-136Q8GYP5_ARATH; MYB transcription factor
STRINGAT1G08810.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-135myb domain protein 60